File not loading

[AlistairNWard]

EVA have some files that don't load. I've put them on AWS so they can be checked at:

http://vcf.iobio.io/?vcf=http://s3.amazonaws.com/iobio/eva_test/genomedk.chrY.gatk_indels.r1.EVA.NOT_LOADING.vcf.gz

http://vcf.iobio.io/?vcf=http://s3.amazonaws.com/iobio/eva_test/genomedk.chr22.gatk_indels.r1.EVA.NOT_LOADING.vcf.gz

[AlistairNWard]

Modified file locations:

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load.vcf.gz

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load_2.vcf.gz

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load_3.vcf.gz

[AlistairNWard]

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load.vcf.gz

Loads fine, but there is something odd with the indel distribution (the x axis appears to be missing).

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load_2.vcf.gz

Only contains chromosome 22, fails to load and is riddled with errors.

http://vcf.iobio.io/?vcf=https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load_3.vcf.gz

Only contains chromosome Y, fails to load and is riddled with errors.

[AlistairNWard]

[AlistairNWard]

Just handle the image problem. Second two files moved to #31

[tonydisera]

I've migrated the chart over to Chase's iobio.viz bar chart object so that outliers can be ignored. The chart is still quite difficult to read.

We could also use Chase's viz component barViewer so that the user could select a region to "zoom" into.

This would require a taller bottom section (+100 px vertical space).

[AlistairNWard]

Looks way better to me. We seem to be using a lot more vertical space for the barViewer than used in bam.iobio. Is it possible to make this a bit smaller?

I'm also seeing an error in the console regarding reading the index. Is this something real?

Uncaught ReferenceError: ignoreErrorMessage is not defined vcf.iobio.js:1024 tabix Error: stderr - Could not load .tbi/.csi index of https://s3.amazonaws.com/iobio/app_testing/vcf_files/fails_to_load.vcf.gz

vcf.iobio.js:1024 tabix Error: prog process exited with code 1

[tonydisera]

Thanks for the feedback! Better?

[AlistairNWard]

I'm happy with it. If we could make the top panel in the 'Insertion & Deletion Lengths' take up more vertical space and squeeze them together a bit more, I don't think that would be a bad thing, but if that can't be done, I'm happy for this to be closed.

[tonydisera]

Yeah, this is probably the best I can do for now. Otherwise, it is hard to select the bounding rectagle on the bottom chart.