search

iobis / edna-species-lists

0 stars 0 forks source link

Comments #22

Closed obishelpdesk closed 5 months ago

obishelpdesk commented 6 months ago

On behalf of nathaniel.rivera1@undp.org

In the case of the Acanthaster planci check if it is not the Acanthaster solaris, and in the case of Pacifigorgia irene and all the sponges it is not possible to conclude that it is that species because with the molecular marker it is not possible to identify at the species level.

pieterprovoost commented 5 months ago

Regarding Acanthaster planci, could be but support is quite strong:

RID: 1UBYWM2801R    
Job Title:Nucleotide Sequence               
Program: BLASTN 
Query: None ID: lcl|Query_99621(dna) Length: 313
Database: nt Nucleotide collection (nt)

Sequences producing significant alignments:
                                                                  Scientific      Common                     Max    Total Query   E    Per.   Acc.                        
Description                                                       Name            Name            Taxid      Score  Score cover Value  Ident  Len        Accession        
Acanthaster planci Tahiti mitochondrial DNA, complete genome      Acanthaster ... crown-of-tho... 133434     579    579   100%  2e-160 100.00 16236      LC566236.1       
Acanthaster planci mitochondrial partial COI gene for cytochro... Acanthaster ... crown-of-tho... 133434     579    579   100%  2e-160 100.00 632        FM174480.1       
Eleutherozoa sp. COT033_L28 cytochrome oxidase subunit I gene,... Eleutherozoa... NA              1705652    562    562   100%  2e-155 99.04  865        KT271563.1       
Acanthaster planci haplotype H3 cytochrome oxidase subunit I...   Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  622        KF012827.1       
Acanthaster planci voucher XY20 cytochrome c oxidase subunit I... Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  632        MW238203.1       
Acanthaster planci mitochondrial partial COI gene for cytochro... Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  632        FM202073.1       
Acanthaster planci mitochondrial partial COI gene for cytochro... Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  632        FM174491.1       
Acanthaster planci mitochondrial partial COI gene for cytochro... Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  632        FM174477.1       
Acanthaster planci mitochondrial partial COI gene for cytochro... Acanthaster ... crown-of-tho... 133434     562    562   100%  2e-155 99.04  632        FM174473.1       
Acanthaster solaris isolate B04 cytochrome c oxidase subunit I... Acanthaster ... NA              2056771    556    556   100%  1e-153 98.72  598        OR654079.1

Also, we have previous evidence from Isla Clarion: https://api.obis.org/occurrence/51388e4b-cfd2-4cfd-aa91-9b006db7c109

pieterprovoost commented 5 months ago

Removed species level identification for Pacifigorgia irene and sponges.