Add main packages for biodiversity/spatial analysis

iobis / obis-hub

Repository for the administration of the OBIS JupyterHub and associated products

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Add main packages for biodiversity/spatial analysis #2

Closed silasprincipe closed 7 months ago

silasprincipe commented 8 months ago

We need to make a list of R and Python packages that should be available for the users as default. I will start a list here, but we need to collect more suggestions:

R

[x] tidyverse
[x] terra
[x] sf
[x] stars
[x] spatstat

Python

[x] xarray
[x] zarr
[x] netCDF4
[x] pandas
[x] numpy
[x] scikit-learn
[x] geopandas

pieterprovoost commented 7 months ago

I have added a few of the R packages for testing and will add the rest as well, see https://github.com/iobis/jupyterhub-deploy-docker/blob/obis/basic-example/Dockerfile.obis-notebook