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iobis / robis

R client for the OBIS API
https://iobis.github.io/robis
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Problem with install_github("iobis/robis") #15

Closed MilenaLa closed 6 years ago

MilenaLa commented 8 years ago

Hello, when I try to install a package this is the warning I am getting:

devtools::install_github("iobis/robis") Downloading GitHub repo iobis/robis@master from URL https://api.github.com/repos/iobis/robis/zipball/master Error in system(full, intern = quiet, ignore.stderr = quiet, ...) : error in running command In addition: Warning message: Failed to parse headers: X-Geo-Block-List:

Any advice on how to deal with this?

Thanks!

pieterprovoost commented 7 years ago

Apologies for the late reply, is this still an issue?

MilenaLa commented 7 years ago

Now I apologies for late reply..Y Yes, this is still an issue. Best regards, Milena

linslsf commented 7 years ago

I am having the same issue.

pieterprovoost commented 7 years ago

Could you please post the output of these commands? Thanks!

devtools::session_info()
httr::with_verbose(devtools::install_github("iobis/robis"))
linslsf commented 7 years ago

devtools::session_info() Session info --------------------------------------------------------------------- setting value
version R version 3.2.1 (2015-06-18) system x86_64, darwin13.4.0
ui RStudio (0.99.893)
language (EN)
collate en_AU.UTF-8
tz America/Los_Angeles
date 2017-05-01

Packages ------------------------------------------------------------------------- package version date source
chron 2.3-47 2015-06-24 CRAN (R 3.2.0) curl 2.3 2016-11-24 CRAN (R 3.2.5) data.table 1.9.6 2015-09-19 CRAN (R 3.2.0) devtools 1.12.0 2016-06-24 CRAN (R 3.2.5) digest 0.6.8 2014-12-31 CRAN (R 3.2.0) git2r 0.18.0 2017-01-01 CRAN (R 3.2.5) githubinstall * 0.2.1 2016-11-21 CRAN (R 3.2.5) httr 1.2.1 2016-07-03 CRAN (R 3.2.5) jsonlite 0.9.17 2015-09-06 CRAN (R 3.2.0) memoise 1.0.0 2016-01-29 CRAN (R 3.2.3) R6 2.1.1 2015-08-19 CRAN (R 3.2.0) rstudioapi 0.6 2016-06-27 CRAN (R 3.2.5) withr 1.0.2 2016-06-20 CRAN (R 3.2.5)

linslsf commented 7 years ago

httr::with_verbose(devtools::install_github("iobis/robis")) -> GET /iobis/robis/raw/master/DESCRIPTION HTTP/1.1 -> Host: github.com -> User-Agent: libcurl/7.51.0 r-curl/2.3 httr/1.2.1 -> Accept-Encoding: gzip, deflate -> Accept: application/json, text/xml, application/xml, / -> <- HTTP/1.1 302 Found <- Date: Mon, 01 May 2017 20:36:39 GMT <- Content-Type: text/html; charset=utf-8 <- Content-Length: 130 <- Server: GitHub.com <- Status: 302 Found <- Cache-Control: no-cache <- Vary: X-PJAX, Accept-Encoding <- X-RateLimit-Limit: 100 <- X-RateLimit-Remaining: 100 <- Access-Control-Allow-Origin: https://render.githubusercontent.com <- Location: https://raw.githubusercontent.com/iobis/robis/master/DESCRIPTION <- X-UA-Compatible: IE=Edge,chrome=1 <- X-Runtime: 0.039236 <- Content-Security-Policy: default-src 'none'; base-uri 'self'; block-all-mixed-content; child-src render.githubusercontent.com; connect-src 'self' uploads.github.com status.github.com collector.githubapp.com api.github.com www.google-analytics.com github-cloud.s3.amazonaws.com wss://live.github.com; font-src assets-cdn.github.com; form-action 'self' github.com gist.github.com; frame-ancestors 'none'; img-src 'self' data: assets-cdn.github.com identicons.github.com collector.githubapp.com github-cloud.s3.amazonaws.com .githubusercontent.com; media-src 'none'; script-src assets-cdn.github.com; style-src 'unsafe-inline' assets-cdn.github.com <- Strict-Transport-Security: max-age=31536000; includeSubdomains; preload <- Public-Key-Pins: max-age=5184000; pin-sha256="WoiWRyIOVNa9ihaBciRSC7XHjliYS9VwUGOIud4PB18="; pin-sha256="RRM1dGqnDFsCJXBTHky16vi1obOlCgFFn/yOhI/y+ho="; pin-sha256="k2v657xBsOVe1PQRwOsHsw3bsGT2VzIqz5K+59sNQws="; pin-sha256="K87oWBWM9UZfyddvDfoxL+8lpNyoUB2ptGtn0fv6G2Q="; pin-sha256="IQBnNBEiFuhj+8x6X8XLgh01V9Ic5/V3IRQLNFFc7v4="; pin-sha256="iie1VXtL7HzAMF+/PVPR9xzT80kQxdZeJ+zduCB3uj0="; pin-sha256="LvRiGEjRqfzurezaWuj8Wie2gyHMrW5Q06LspMnox7A="; includeSubDomains <- X-Content-Type-Options: nosniff <- X-Frame-Options: deny <- X-XSS-Protection: 1; mode=block <- X-Served-By: f0ee042be143fcba78041fc2f69c0aa7 <- Age: 113 <- Vary: Accept-Encoding <- X-GitHub-Request-Id: CC45:22675:1350A:1F3AF:59079C57 <- -> GET /iobis/robis/master/DESCRIPTION HTTP/1.1 -> Host: raw.githubusercontent.com -> User-Agent: libcurl/7.51.0 r-curl/2.3 httr/1.2.1 -> Accept-Encoding: gzip, deflate -> Accept: application/json, text/xml, application/xml, / -> <- HTTP/1.1 200 OK <- Content-Security-Policy: default-src 'none'; style-src 'unsafe-inline' <- Strict-Transport-Security: max-age=31536000 <- X-Content-Type-Options: nosniff <- X-Frame-Options: deny <- X-XSS-Protection: 1; mode=block <- ETag: "16958dd82e86a9778d7547a485177fd8f195dda9" <- Content-Type: text/plain; charset=utf-8 <- Cache-Control: max-age=300 <- X-Geo-Block-List: <- X-GitHub-Request-Id: 0E88:2316:1F1127F:2053FD1:59079BE6 <- Content-Encoding: gzip <- Content-Length: 238 <- Accept-Ranges: bytes <- Date: Mon, 01 May 2017 20:36:39 GMT <- Via: 1.1 varnish <- Connection: keep-alive <- X-Served-By: cache-sea1039-SEA <- X-Cache: HIT <- X-Cache-Hits: 1 <- X-Timer: S1493670999.420320,VS0,VE0 <- Vary: Authorization,Accept-Encoding <- Access-Control-Allow-Origin: <- X-Fastly-Request-ID: d98faaa3fb9adf832794b15221b2f1cad5bb21b4 <- Expires: Mon, 01 May 2017 20:41:39 GMT <- Source-Age: 112 <- Downloading GitHub repo iobis/robis@master from URL https://api.github.com/repos/iobis/robis/zipball/master -> HEAD /repos/iobis/robis/contents/.gitmodules?ref=master HTTP/1.1 -> Host: api.github.com -> User-Agent: libcurl/7.51.0 r-curl/2.3 httr/1.2.1 -> Accept-Encoding: gzip, deflate -> Accept: application/json, text/xml, application/xml, / -> <- HTTP/1.1 404 Not Found <- Server: GitHub.com <- Date: Mon, 01 May 2017 20:36:39 GMT <- Content-Type: application/json; charset=utf-8 <- Status: 404 Not Found <- X-RateLimit-Limit: 60 <- X-RateLimit-Remaining: 58 <- X-RateLimit-Reset: 1493674487 <- X-GitHub-Media-Type: github.v3 <- Access-Control-Expose-Headers: ETag, Link, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval <- Access-Control-Allow-Origin: <- Content-Security-Policy: default-src 'none' <- Strict-Transport-Security: max-age=31536000; includeSubdomains; preload <- X-Content-Type-Options: nosniff <- X-Frame-Options: deny <- X-XSS-Protection: 1; mode=block <- Content-Encoding: gzip <- X-GitHub-Request-Id: CC47:4F32:46638A:591306:59079C57 <- -> GET /repos/iobis/robis/zipball/master HTTP/1.1 -> Host: api.github.com -> User-Agent: libcurl/7.51.0 r-curl/2.3 httr/1.2.1 -> Accept-Encoding: gzip, deflate -> Accept: application/json, text/xml, application/xml, / -> <- HTTP/1.1 302 Found <- Server: GitHub.com <- Date: Mon, 01 May 2017 20:36:39 GMT <- Content-Type: text/html;charset=utf-8 <- Content-Length: 0 <- Status: 302 Found <- X-RateLimit-Limit: 60 <- X-RateLimit-Remaining: 58 <- X-RateLimit-Reset: 1493674487 <- Cache-Control: public, must-revalidate, max-age=0 <- Expires: Mon, 01 May 2017 20:36:39 GMT <- Location: https://codeload.github.com/iobis/robis/legacy.zip/master <- Access-Control-Expose-Headers: ETag, Link, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval <- Access-Control-Allow-Origin: <- Content-Security-Policy: default-src 'none' <- Strict-Transport-Security: max-age=31536000; includeSubdomains; preload <- X-Content-Type-Options: nosniff <- X-Frame-Options: deny <- X-XSS-Protection: 1; mode=block <- Vary: Accept-Encoding <- X-Served-By: e14705a23c085afeff5e104b1fc3922a <- X-GitHub-Request-Id: CC47:4F32:4663A3:59132E:59079C57 <- -> GET /iobis/robis/legacy.zip/master HTTP/1.1 -> Host: codeload.github.com -> User-Agent: libcurl/7.51.0 r-curl/2.3 httr/1.2.1 -> Accept-Encoding: gzip, deflate -> Accept: application/json, text/xml, application/xml, / -> <- HTTP/1.1 200 OK <- Content-Length: 15976 <- Access-Control-Allow-Origin: https://render.githubusercontent.com <- Content-Security-Policy: default-src 'none'; style-src 'unsafe-inline' <- Strict-Transport-Security: max-age=31536000 <- Vary: Authorization,Accept-Encoding <- X-Content-Type-Options: nosniff <- X-Frame-Options: deny <- X-XSS-Protection: 1; mode=block <- ETag: "df9d532f0c5adfbe283091d34a1dc0ea28adcd7d" <- Content-Type: application/zip <- Content-Disposition: attachment; filename=iobis-robis-df9d532.zip <- X-Geo-Block-List: <- Date: Mon, 01 May 2017 20:36:40 GMT <- X-GitHub-Request-Id: CC49:233A:18A3AD:1EDC65:59079C58 <- Installing robis % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 Not Found Warning in download.packages(x$name, destdir = dest_dir, repos = x$repos, : download of package ‘dplyr’ failed Error in download.packages(x$name, destdir = dest_dir, repos = x$repos, : subscript out of bounds In addition: Warning message: In download.file(url, destfile, method, mode = "wb", ...) : download had nonzero exit status

pieterprovoost commented 7 years ago

@linslsf This is probably not related to the problem reported by @MilenaLa, but can you please update R (run devtools::session_info() to confirm the update) and try again?