Open pieterprovoost opened 1 year ago
From https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml:
AS:i: Alignment score. Can be negative. Can be greater than 0 in --local mode (but not in --end-to-end mode). Only present if SAM record is for an aligned read.
From https://bowtie-bio.sourceforge.net/bowtie2/manual.shtml: