search

iodepo / OceanBestPractices

Repository to store the OpenSource version of the code made by E84 for OceanBestPractices.org
https://oceanbestpractices.org
GNU Affero General Public License v3.0
12 stars 6 forks source link

Need WoRMS taxonomy in Neptune compliant format for ingest. #116

Open paulpilone opened 2 years ago

paulpilone commented 2 years ago

For OBP-243 we've been asked to import the WoRMS taxonomy (http://www.marinespecies.org/). We'll need that in a Neptune compliant format and should be ready to test the new ingest process with it.

Neptune formats: https://docs.aws.amazon.com/neptune/latest/userguide/sparql-media-type-support.html

pbuttigieg commented 2 years ago

It seems that they distribute in DwC CSVs - were you able to secure that? http://www.marinespecies.org/usersrequest.php

Once you have it, you can convert it into RDF/XML with tools like https://any23.apache.org/, that should be importable into Neptune in that form. The relations may need some tweaking to make sense.

paulineobps commented 1 year ago

Are we any further with getting WoRMS loaded please?