ioerger2
commented
1 year ago Thanks for reporting this. The bug should now be fixed in release v1.0.7 of Transit2. It had to do with a dependency on rpy2. If you have further problems, please let me know.
Tom Ioerger ioerger@cs.tamu.edu
Hi!
When trying to generate a correlation plot using cholesterol_glycerol.transit data in GUI I received an error message:
[transit_tools:enter()] Starting Corrplot analysis [transit_tools:calc_gene_means()] Normalizing using: TTR File "/Users/smedvede/transit2/src/pytransit/components/panel_helpers.py", line 698, in run_wrapper method_instance = from_gui_function(gui.frame) File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 243, in from_gui Method.output( File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 319, in output g.figure.savefig(output_path, bbox_inches='tight') File "/Users/smedvede/transit2/src/pytransit/specific_tools/transit_tools.py", line 278, in exit raise error File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 279, in output position_hash[col] = FloatVector([x[i] for x in means])
'NoneType' object is not callable Traceback (most recent call last): File "/Users/smedvede/transit2/src/pytransit/components/panel_helpers.py", line 705, in run thread = threading.Thread(target=run_wrapper()) File "/Users/smedvede/transit2/src/pytransit/components/panel_helpers.py", line 698, in run_wrapper method_instance = from_gui_function(gui.frame) File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 243, in from_gui Method.output( File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 319, in output g.figure.savefig(output_path, bbox_inches='tight') File "/Users/smedvede/transit2/src/pytransit/specific_tools/transit_tools.py", line 278, in exit raise error File "/Users/smedvede/transit2/src/pytransit/methods/corrplot.py", line 279, in output position_hash[col] = FloatVector([x[i] for x in means]) TypeError: 'NoneType' object is not callable
Best wishes, Sofia