Sample Preparation schema improvements

mschorn0713 commented 5 years ago

[x] Add fungal media and other media specified by early user feedback
[x] Links to Wikipedia/other ontology
[x] Add to "Other" description: can specify media components, check for purity
[x] Add box for link/reference to "other" media when "other" is selected
[x] Add shaking RPMs (optional)
[x] Add other kinds of flasks to aeration section: conical tubes, deep-well plates, and other
[x] Add units for temperature and growth time in headers
[x] Other parameters requested by early users: volume of culture--add to Medium details section if liquid is selected ~~check for purity~~
[x] move metagenome sections to "Medium details" with extra radio button

sverhoeven commented 4 years ago

@justinjjvanderhooft on ontology @mschorn0713 add mediums, other descrip, shaking, descriptions @sverhoeven move metagenome to medium details column + volume

sverhoeven commented 4 years ago

Also grouped growth temp, duration and phase into single column/object

sverhoeven commented 4 years ago

Found MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.

The downloaded MicrO.owl contains a microbiological culture medium branch with medium definitions including ingredients, sadly it's IRI give not found errors. So the ontology can not be used in our web application.

sverhoeven commented 4 years ago

Keep using existing urls, as we could not find a single ontology for each field. See #63

iomega / paired-data-form

Sample Preparation schema improvements #49