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iontorrent / TMAP

Torrent Mapping Alignment Program
GNU General Public License v2.0
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3.2.0 w/ perftools - compile error on OSX 10.8.2, 'rpl_malloc' undeclared #4

Open 2bits opened 12 years ago

2bits commented 12 years ago

I'm getting a build error when I --enable-perftools using google-perftools-2.0 on OSX where it claims a variable is undeclared in some scope:

/usr/bin/llvm-g++ -DHAVE_CONFIG_H -I.     -Os -w -pipe   -mmacosx-version-min=10.8 -march=core2 -msse4 -pthread -D__STDC_LIMIT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -c -o src/sw/lib/Solution1.o src/sw/lib/Solution1.cpp
In file included from /usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/xmmintrin.h:45,
                 from /usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/emmintrin.h:35,
                 from src/sw/lib/vsw16.h:33,
                 from src/sw/lib/Solution1.cpp:7:
/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/mm_malloc.h: In function 'void* _mm_malloc(size_t, size_t)':
/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include/mm_malloc.h:56: error: 'rpl_malloc' was not declared in this scope
make[2]: *** [src/sw/lib/Solution1.o] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

This is occuring when I build with Homebrew, but the error occurs if I build without it.

Here is my non-Homebrew install log Here is my Hombrew running install log Here is my Homebrew config.log

I'm not sure how to patch this. So no pull request unfortunately, but thanks for taking a look.