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ioos / bio_data_guide

Standardizing Marine Biological Data Working Group - An open community to facilitate the mobilization of biological data to OBIS.
https://ioos.github.io/bio_data_guide/
MIT License
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[Dataset]: Deep-Sea Benthic Metazoa metabarcoding #162

Open FranckLejzerowicz opened 1 year ago

FranckLejzerowicz commented 1 year ago

Contact details

franckl@uio.no

Dataset Title

Global deep-sea benthic Metazoa V1V2 metabarcoding dataset

Describe your dataset and any specific challenges or blockers you have or anticipate.

This published dataset may not have been synced to OBIs and I wish to learn our to either submit it to OBIS de novo, or how to sync it from EBI/NCBI to OBIS. This not only consists of per-sample fastq files and their full metadata, but also of feature tables resulting from a rater specific metabarcoding data analysis pipeline.

Link to "raw" Data Files.

https://figshare.com/projects/Eukaryotic_eDNA_eRNA_From_CCZ_Benthos/98972

Br-Johnson commented 1 year ago

This might help!

https://docs.gbif.org/publishing-dna-derived-data/1.0/en/

albenson-usgs commented 1 year ago

That guide is a great! We'll also cover DNA Derived data specifically at the upcoming workshop 👍

github-actions[bot] commented 11 months ago

Thank you for identifying this dataset for mobilization. The workshop hosts wanted to check in. Is there anything you need help with in order to mobilize this dataset to OBIS? If you would like assistance from an OBIS node you can find node contacts listed here.