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ioos / bio_data_guide

Standardizing Marine Biological Data Working Group - An open community to facilitate the mobilization of biological data to OBIS.
https://ioos.github.io/bio_data_guide/
MIT License
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[dataset]: Uploading invertebrate stable isotope data to OBIS #248

Open ospereir opened 4 months ago

ospereir commented 4 months ago

Contact details

ospereir@ucsd.edu

Dataset Title

Stable isotope data of invertebrates off the Southern California Borderland

Describe your dataset and any specific challenges or blockers you have or anticipate.

I am working with stable isotope (d13C, d15N) data of invertebrates associated with phosphorites and ferromanganese crusts off the Southern California Borderland. I need help with uploading the dataset to OBIS.

Info about "raw" Data Files.

The raw data is a file with stable isotope values of invertebrates.

ospereir commented 2 months ago

Post-workshop update: I was able to create my occurrence table and eMoF table (pivot_longer() worked great!), check species names using the WoRMS package in R, and did some data cleaning. I'm wrapping up my PhD, but after my defense I'll have more time to dedicate to this and will continue this work then. Thanks for the help!!

sformel-usgs commented 3 weeks ago

@ospereir feel free to reach out to me when you're ready. We're on the verge of publishing a similar isotope dataset. I'll try to remember to link it here once it's available.