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ioos / bio_data_guide

Standardizing Marine Biological Data Working Group - An open community to facilitate the mobilization of biological data to OBIS.
https://ioos.github.io/bio_data_guide/
MIT License
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[dataset] align IFCB data to DwC and produce notebook to demonstrate process #277

Open sformel-usgs opened 4 weeks ago

sformel-usgs commented 4 weeks ago

Who is requesting this?

Stephen Formel

What is being requested?

https://gcoos4.geos.tamu.edu/erddap/tabledap/phytoplankton_surfside_2017.html

This dataset should be shared to OBIS, but needs to be aligned to DwC first. @aalloilla is willing to do this and has the expertise to do so, but we would like to take the opportunity to document the alignment and publication for the benefit of the community.

What is the requested deadline and why?

No deadline

What is the current status quo (i.e., what happens if this does not get done)?

Data will not be interoperable with other biodiversity data being served through OBIS.

What indicates this is done (i.e., how do we know this is complete)?

Data is published on OBIS and notebook is published through IOOS

Provide a description or any other important information.

Paper with useful guidance: https://doi.org/10.1575/1912/27377

OBIS dataset examples to provide guidance:

  1. https://obis.org/dataset/d9c9d38f-add2-45dc-a3fe-234f46c1d41d
  2. https://obis.org/dataset/a326b7a3-1e74-4ae9-95d4-6b38d889cbe9
MathewBiddle commented 4 weeks ago

FYI @sformel-usgs

aalloilla commented 4 weeks ago

Just to clarify (I'm not sure I made it clear during our meeting): we don't have the new data yet. This task will need to wait until we get the re-classified data from the data provider, and we publish it on ERDDAP. As of right now, the ERDDAP dataset link points to the old data that will be overwritten.

sbeaulieu commented 3 weeks ago

I'll be talking a bit about this at upcoming IOOS DMAC tech webinar, in particular see: Daniel, P.C., Bahr, F.L., Brunjes, I., Golden, T., Khazmutdinova, K., & Beaulieu, S.E. (2024). Prototype OBIS-ENV-Data package for HABDAC IFCB data products from Santa Cruz Municipal Wharf. CeNCOOS/OBIS_workshop_2024_IFCB: July 22, 2024 Release (Version 1.0.0) [Software]. GitHub. https://github.com/CeNCOOS/OBIS_workshop_2024_IFCB