Collect MBON dataset DOI, download, and use statistics from OBIS and GBIF API - Githubissues

ioos / ioos_metrics

Working on creating metrics for the IOOS by the numbers

https://ioos.github.io/ioos_metrics/

MIT License

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Collect MBON dataset DOI, download, and use statistics from OBIS and GBIF API #69

Closed MathewBiddle closed 1 month ago

MathewBiddle commented 2 months ago

I wrote a clunky python notebook here https://github.com/MathewBiddle/sandbox/blob/main/notebooks/MBON_OBIS_statistics.ipynb

@sformel-usgs wrote something in R I believe.

MathewBiddle commented 2 months ago

xref:

https://github.com/ioos/mbon-docs/issues/45

MathewBiddle commented 1 month ago

Code from Steve: xmbon_stats.zip

MathewBiddle commented 1 month ago

@laurabrenskelle Should we write something in python or R? We have the start to both options.

MathewBiddle commented 1 month ago

My vote is for python because it would be easier to add to the ioos_metrics library.

laurabrenskelle commented 1 month ago

Sure, I think both options will work. I am more familiar with R, but since we have starts for both and the ioos_metrics library is in python, python seems like a good choice.

MathewBiddle commented 1 month ago

Tasks:

[x] run Steve's R
[x] Run Matt's python
[x] Compare results
[x] Update python to align with Steve's code
[x] Migrate Python code as function to ioos_metrics

MathewBiddle commented 1 month ago

Just found this: https://pygbif.readthedocs.io/en/latest/index.html maybe pygbif is the right approach?

MathewBiddle commented 1 month ago

xref: https://github.com/ioos/ioos_metrics/pull/74