use pyobis to calculate the number of citations of MBON data

[MathewBiddle]

This notebook is a good start https://ioos.github.io/ioos_code_lab/content/code_gallery/data_access_notebooks/2022-11-23_pyobis_example.html

I think citations will come from GBIF, unless OBIS brings those into the available records.

[MathewBiddle]

It would be cool if we could breakdown the MBON datasets by collection methods (eDNA, SCUBA, Passive Acoustic, Animal Tracking, etc..)

I think we would need to parse abstracts from the OBIS API response https://api.obis.org/v3/dataset?instituteid=23070

Unless there is another place we can gather collecting method information from the API?

[MathewBiddle]

gist: https://gist.github.com/MathewBiddle/7a029c679fb816f613bed20600cea8e6

import pandas as pd
import pyobis

institution_id = 23070

query = pyobis.dataset.search(instituteid=institution_id)

df = pd.DataFrame(query.execute())

df_meta = pd.DataFrame.from_records(df["results"])

for line in df_meta['abstract']:
  print(line,'\n--\n')

What I've summarized so far (manually by reading each abstract). Observing methods include:

• diver survey
• fisheries independent monitoring
• metabarcoding
• photo plot
• transect survey
• trawl survey
• bongo net
• quadrat survey

[MathewBiddle]

[MathewBiddle]

closed with https://github.com/ioos/ioos_metrics/pull/84