Improvement and fixes in serialisation of gene models in GTF format - Githubissues

iossifovlab / gpf

GPF: Genotypes and Phenotypes in Families

MIT License

2 stars 0 forks source link

Improvement and fixes in serialisation of gene models in GTF format #680

Closed lchorbadjiev closed 2 months ago

lchorbadjiev commented 2 months ago

Background

When serializing gene models into GTF format, we need to produce a phase field for all coding sequence features - CDS, start_codon and stop_codon.

Aim

Fully support serialization of GeneModels in GTF format.

Implementation

Multiple functions for processing GTF coding sequence features were added. Some functions in dae.utils.regions package were fixed.

Detailed testing of GTF coding sequence features supported.