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iossifovlab
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gpf
GPF: Genotypes and Phenotypes in Families
MIT License
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[BUG] De-synchronization in PriorityGenomicContext when the GRR instance is overriden
#667
iordanivanov
opened
2 months ago
0
Annotation maintenance part 2: refactor build_annotation_pipeline, store raw config in pipeline instance, streamline how tools get what they need from the genomic context
#666
iordanivanov
closed
2 months ago
0
grr: add support for style tag in resource description
#665
joankosev
closed
2 months ago
0
Unit test "test_normalize_tandem_repeats" depends on default GRR for hg38 reference genome
#664
iordanivanov
opened
2 months ago
0
caching: add etags to requests
#663
joankosev
closed
2 months ago
0
Annotation maintenance part 1: cleanup, lint, type fixes + separate configuration code into own module
#662
iordanivanov
closed
2 months ago
0
GRR demo annotators
#661
IvoTod
closed
2 months ago
0
[BUG] Gene models cannot infer file format
#660
IvoTod
opened
2 months ago
0
Bigwig fixes
#659
iordanivanov
closed
2 months ago
0
grr info: update page on gene models and ref genome
#658
joankosev
closed
3 months ago
0
Parquet variants/loader region optimization
#657
iordanivanov
closed
2 months ago
0
External demo annotator
#656
IvoTod
closed
2 months ago
1
add gp gene symbols api
#655
IvoStefanov
closed
2 months ago
0
Grr info page fixes
#654
IvoStefanov
closed
3 months ago
0
Add etags
#653
joankosev
closed
3 months ago
0
[BUG] Cannot use annotation tools with instance pipeline.
#652
IvoTod
opened
3 months ago
0
Batch annotation for annotate_columns
#651
IvoTod
closed
3 months ago
0
fix child description links
#650
IlinaGergova
closed
3 months ago
0
fix grr gene scores info page missing description
#649
IvoStefanov
closed
3 months ago
0
[BUG] Automated dataset description links are outdated
#648
IvoTod
closed
3 months ago
0
Grr info page UI
#647
IvoStefanov
closed
3 months ago
0
Move STATICFILES_DIRS to dev settings
#646
IvoTod
closed
3 months ago
0
Implement GenomicPositionTable for bigWig format
#645
iordanivanov
closed
3 months ago
0
update annotate doc template
#644
IvoStefanov
closed
3 months ago
0
Grr UI update
#643
IvoStefanov
closed
3 months ago
0
Add pheno import parallelization
#642
IvoTod
closed
3 months ago
0
fix annotate doc link test
#641
IvoStefanov
closed
3 months ago
0
Implement Schema2 parquet genotype and import storage
#640
iordanivanov
closed
3 months ago
0
add dataset description to no permission view
#639
IvoStefanov
closed
3 months ago
0
fix grr index page issues
#638
IvoStefanov
closed
3 months ago
0
Remove families from phenotype studies
#637
IvoTod
closed
3 months ago
0
update annotate doc template ui
#636
IvoStefanov
closed
3 months ago
0
Multiple measure regressions
#635
IvoTod
closed
3 months ago
0
Replace families data to_dict with manual iteration
#634
IvoTod
closed
4 months ago
0
[BUG] has_variants dependency should be removed
#633
IvoTod
closed
3 months ago
0
Fix impala2 import
#632
IvoTod
closed
4 months ago
0
annotate doc: better styling for preamble in template
#631
iordanivanov
closed
4 months ago
0
[BUG] Loading studies is slow
#630
IvoTod
opened
4 months ago
0
dataset hierarchy: exclude datasets with a hidden group
#629
joankosev
closed
4 months ago
0
Annotate doc UI
#628
IvoStefanov
closed
4 months ago
0
wpgf: clean up wgpf tool
#627
iordanivanov
closed
4 months ago
0
Annotation pipeline as genomic resource
#626
iordanivanov
closed
4 months ago
0
Fix impala storage pedigree only
#625
IvoTod
closed
4 months ago
0
Annotation preambule
#624
iordanivanov
closed
4 months ago
0
Pedigree only import support
#623
IvoTod
closed
4 months ago
0
Store and utilize contigs in schema2 parquet
#622
iordanivanov
closed
4 months ago
0
Regions fix and cleanup
#621
iordanivanov
closed
4 months ago
0
Pheno fixes
#620
IvoTod
closed
4 months ago
0
Pheno fixes
#619
IvoTod
closed
5 months ago
0
[ENH] Enrichment tool test headers are not rounded well
#618
IvoStefanov
closed
2 months ago
0
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