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ipb-halle / MetFamily

Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.
GNU General Public License v3.0
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Import data: Error in [[: subscript out of bounds #39

Closed sneumann closed 5 years ago

sneumann commented 5 years ago

Hi, when importing some IPB data (Height_1_20181212164.txt and Spectrum_1_20181212164.msp) into MetFamily, the stack trace below occurs. This has been fixed in MetFamilyDevel, probably as part of #19.

Yours, Steffen

/var/log/shiny-server/shiny-server-shiny-20181218-104222-42394.log:

Warning in if (resultObj == "Number of spectra is zero") { :
  the condition has length > 1 and only the first element will be used
Warning: Error in [[: subscript out of bounds
Stack trace (innermost first):
    72: strsplit
    71: readProjectData
    70: eval [/srv/shiny-server/server.R#2146]
    69: eval
    68: withProgress
    67: observeEventHandler [/srv/shiny-server/server.R#2145]
     1: runApp