Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.
issue: devtools::check()
ℹ Installed roxygen2 version (7.2.3) doesn't match required (6.0.1)
solution: Update DESCRIPTION File by changing roxygen2 version to 7.2.3
adding egg package to DESCRIPTION file
issue: devtools::check()
Error in load_all():
! Failed to load R/R_packages.R
Caused by error in library() at MetFamily-master/R/R_packages.R:19:0: ! there is no package called 'egg'
solution: Update DESCRIPTION File by adding: egg package
define Encoding in the DESCRIPTION file
issue: devtools::check()
ℹ Updating MetFamily documentation
Warning: roxygen2 requires Encoding: "UTF-8"
ℹ Current encoding is NA
solution: Update DESCRIPTION File by adding: Encoding: UTF-8
adding import(roxygen2) to NAMESPACE file
issue: devtools::check()
ℹ Installed roxygen2 version (7.2.3) doesn't match required (6.0.1)
solution:
Update NAMESPACE File by adding: import(roxygen2)
issue: devtools::check() ℹ Installed roxygen2 version (7.2.3) doesn't match required (6.0.1)
solution: Update DESCRIPTION File by changing roxygen2 version to 7.2.3
issue: devtools::check()
Error in
load_all(): ! Failed to load R/R_packages.R Caused by error inlibrary()at MetFamily-master/R/R_packages.R:19:0: ! there is no package called 'egg'solution: Update DESCRIPTION File by adding: egg package
issue: devtools::check() ℹ Updating MetFamily documentation Warning: roxygen2 requires Encoding: "UTF-8" ℹ Current encoding is NA
solution: Update DESCRIPTION File by adding: Encoding: UTF-8
issue: devtools::check() ℹ Installed roxygen2 version (7.2.3) doesn't match required (6.0.1)
solution:
Update NAMESPACE File by adding: import(roxygen2)