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iqbal-lab-org / clockwork

CRyPTIC data processing pipelines
MIT License
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ERROR : Unknown image format/type #102

Open DOH-KEW4303 opened 2 years ago

DOH-KEW4303 commented 2 years ago

I am stuck trying to troubleshoot this error when I run 'clockwork' command. I downloaded the version clockwork_v0.11.3.img and have made it executable with chmod. I have singularity version 2.4.2-dist installed. Any help is appreciated!

DOH-KEW4303 commented 2 years ago

I have also tried singularity build clockwork_v0.11.3.img

and error is: ERROR: clockwork_v0.11.3.img is not an image file

martinghunt commented 2 years ago

I would use a newer version of singularity - 2.4.2 is very old. The clockwork images on github were built using version 3.5.3.

What happens if you run this?

singularity exec clockwork_v0.11.3.img clockwork
DOH-KEW4303 commented 2 years ago

Ah I see. It's the version that installed when I ranconda install singularity

From the command above I get: ERROR : Image path doesn't exists ABORT : Retval = 255

martinghunt commented 2 years ago

That error is suggesting that the file clockwork_v0.11.3.img doesn't exist. Can you check that it does?

I doubt that singularity 2.4.2 will work on new images. It looks like it's from Dec 2017 and is a major version too old.