Multi-threading option for running decontamination analysis

iqbal-lab-org / clockwork

CRyPTIC data processing pipelines

MIT License

32 stars 22 forks source link

Closed mezewudo closed 4 years ago

mezewudo commented 4 years ago

Please, is there any command option for running the nextflow decontamination using multiple threads, to speed up the analysis?

martinghunt commented 4 years ago

Yes, there's a nextflow command line option. eg --mapping_threads 10 for 10 threads.

mezewudo commented 4 years ago

Great, thanks!