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cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
https://panthema.net/cobs
MIT License
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False negatives - some sort of interaction with gzip / bgzip
#26
rmcolq
opened
2 months ago
2
Fix installation with pip
#25
aromberg
opened
5 months ago
0
Error compiling on Apple Silicon/ARM64
#24
aromberg
opened
6 months ago
0
Iteratively adding documents
#23
josephhughes
opened
7 months ago
0
fix: not erroring out when a non-ACGT base is in the query file
#22
leoisl
closed
10 months ago
0
Now enabling querying reads from fastq.gz files
#21
leoisl
closed
1 year ago
0
Query reads from fastq.gz files
#20
jermp
closed
1 year ago
3
Result output truncates reference files at first dot
#19
smehringer
opened
1 year ago
1
Allowing streaming of COBS indexes
#18
leoisl
closed
1 year ago
0
Refactoring BOOST search in CMake
#17
leoisl
closed
2 years ago
0
Enables clang compilation
#16
leoisl
closed
2 years ago
0
Improve Mac OS X delivery - make COBS compilable with clang
#15
leoisl
closed
10 months ago
1
Run test coverage in CI and upload badge
#14
leoisl
closed
10 months ago
0
Add CI
#13
leoisl
closed
2 years ago
0
Update conda recipe and make it build for mac and linux
#12
leoisl
closed
10 months ago
1
Adding versioning
#11
leoisl
closed
2 years ago
0
Use COBS on existing index
#10
davidmaimoun
closed
7 months ago
2
OS X build + integration tests
#9
leoisl
closed
2 years ago
3
COBS for 600K genomes
#8
davidmaimoun
closed
7 months ago
5
Format of output
#7
graceblackwell
closed
7 months ago
1
Fix undefined behaviour of char bit shifting when combining classic i…
#6
Zhicheng-Liu
closed
3 years ago
0
Reset output block after each batch when combining classic indices
#5
Zhicheng-Liu
closed
3 years ago
0
Modify combine cmd
#4
giang-nghg
closed
3 years ago
0
Expose `classic_construct_from_documents`
#3
giang-nghg
closed
3 years ago
0
Expose classic combine
#2
giang-nghg
closed
3 years ago
0
Expose classic combine
#1
giang-nghg
closed
3 years ago
0