iqbal-lab-org cobs issues

iqbal-lab-org / cobs

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

https://panthema.net/cobs

MIT License

16 stars 2 forks source link

issues

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False negatives - some sort of interaction with gzip / bgzip

#26 rmcolq opened 3 months ago
2
Fix installation with pip

#25 aromberg opened 6 months ago
0
Error compiling on Apple Silicon/ARM64

#24 aromberg opened 7 months ago
0
Iteratively adding documents

#23 josephhughes opened 8 months ago
0
fix: not erroring out when a non-ACGT base is in the query file

#22 leoisl closed 12 months ago
0
Now enabling querying reads from fastq.gz files

#21 leoisl closed 1 year ago
0
Query reads from fastq.gz files

#20 jermp closed 1 year ago
3
Result output truncates reference files at first dot

#19 smehringer opened 1 year ago
1
Allowing streaming of COBS indexes

#18 leoisl closed 2 years ago
0
Refactoring BOOST search in CMake

#17 leoisl closed 2 years ago
0
Enables clang compilation

#16 leoisl closed 2 years ago
0
Improve Mac OS X delivery - make COBS compilable with clang

#15 leoisl closed 12 months ago
1
Run test coverage in CI and upload badge

#14 leoisl closed 12 months ago
0
Add CI

#13 leoisl closed 2 years ago
0
Update conda recipe and make it build for mac and linux

#12 leoisl closed 12 months ago
1
Adding versioning

#11 leoisl closed 2 years ago
0
Use COBS on existing index

#10 davidmaimoun closed 8 months ago
2
OS X build + integration tests

#9 leoisl closed 2 years ago
3
COBS for 600K genomes

#8 davidmaimoun closed 8 months ago
5
Format of output

#7 graceblackwell closed 8 months ago
1
Fix undefined behaviour of char bit shifting when combining classic i…

#6 Zhicheng-Liu closed 3 years ago
0
Reset output block after each batch when combining classic indices

#5 Zhicheng-Liu closed 3 years ago
0
Modify combine cmd

#4 giang-nghg closed 3 years ago
0
Expose `classic_construct_from_documents`

#3 giang-nghg closed 3 years ago
0
Expose classic combine

#2 giang-nghg closed 3 years ago
0
Expose classic combine

#1 giang-nghg closed 3 years ago
0