Kmer indexing code refactoring

iqbal-lab-org / gramtools

Genome inference from a population reference graph

MIT License

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Kmer indexing code refactoring #138

Closed bricoletc closed 5 years ago

bricoletc commented 5 years ago

The build.cpp file which computes search states for kmers (indexing) had code redundancy and hard to follow variable names. The changes are variable renamings and a collapsing of two functions (initial_kmer_index_cache and update_kmer_index_cache) into a single one: build_kmer_cache

All unit tests pass.