Release 1.6.0

[bricoletc]

In this release we want a stable version of gramtools for use by minos. I propose b95321b.

I ran a pipeline to compute Mendelian errors from Plasmodium crosses and found:

• 958fd53 : the commit that current latest minos uses

• cf5cc20 : the version I propose using (minus 1 commit; b95321b adds a CLI bugfix). Main change is it uses a coverage graph to store and output per base coverage

x-axis is filtering sites by increasing 5-percent quantiles of GT CONF.

We get the same Mend error rate with no filtering: 6.5 x 10e-04

This is slightly higher than the analysis I ran in May using e66865e, at 5.0 x 10e-04.

This could be due to code changes OR having then analysed 52 samples genome wide rather than 20 samples on chroms 1&2.

[bricoletc]

@iqbal-lab @martinghunt sound OK?

[iqbal-lab]

when you say "We get the same Mend error rate" - same as what?

[bricoletc]

between the two commits shown

[iqbal-lab]

ah i see, ok by me!

[martinghunt]

Looks good to me 👍