Move kmers indexing to build step

iqbal-lab-org / gramtools

Genome inference from a population reference graph

MIT License

92 stars 15 forks source link

Move kmers indexing to build step #40

Closed sm0179 closed 6 years ago

sm0179 commented 7 years ago

At the moment, if the .precalc file is not found, the SA-intervals for small kmers are precalculated at the beginning of mapping. Better to move this step as part of the --build process, as it only needs to be done once

ffranr commented 6 years ago

Solved with this commit: https://github.com/iqbal-lab-org/gramtools/commit/858160cdebd3f827c06335476ea69cb6491328ba