Store bitmask over BWT to file during build step

iqbal-lab-org / gramtools

Genome inference from a population reference graph

MIT License

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Store bitmask over BWT to file during build step #42

Closed sm0179 closed 6 years ago

sm0179 commented 7 years ago

The bit-vector mask over the BWT can also be calculated together with the fm-index as part of the --build step and stored to a file in the cache dir. I think sdsl makes it easy to store its data structures.

ffranr commented 6 years ago

Done.