k-mers overlapping variants

iqbal-lab-org / gramtools

Genome inference from a population reference graph

MIT License

92 stars 15 forks source link

k-mers overlapping variants #44

Closed sm0179 closed 7 years ago

sm0179 commented 7 years ago

modify the variantkmers.py script to take in the read length as arg and generate kmers surrounding the variants (+/- RLen bases) in addition to the ones overlapping variants

ffranr commented 7 years ago

Done.