Add tests to linear PRG construction script

iqbal-lab-org / gramtools

Genome inference from a population reference graph

MIT License

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Add tests to linear PRG construction script #45

Closed sm0179 closed 6 years ago

sm0179 commented 7 years ago

need more tests for the linear PRG construction script. Should check if site markers appear in increasing order, if even numbers are always enclosed by 2 odds and if there are exactly 2 occurences of each odd marker

ffranr commented 7 years ago

I think this script should be re-written in C++ (with tests of course). What do you guys think?

iqbal-lab commented 6 years ago

Yes

ffranr commented 6 years ago

Martin has done some work on this issue (pull request accepted). More to do but will start a new issue based around rewriting the PRG script.