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iqbal-lab-org / gramtools

Genome inference from a population reference graph
MIT License
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Ensure SDSL runtime tempoary files are unique to each gramtools instance #61

Closed ffranr closed 6 years ago

ffranr commented 7 years ago

SDSL generates temporary files at runtime. These files are unique to each job ID.

Several instances of gramtools were run as part of a job array on the EBI grid during the precalc phase. It is likely that different instances of gramtools malformed the SDSL tempoary files by overwriting and reading from the same set of files during overlapping time periods.

Solution to issue: Ensure that SDSL tempoary files are unique to each gramtools instance.

ffranr commented 6 years ago

SDSL temporary files are unique to a PID by default.