Closed sm0179 closed 6 years ago
gramtools version used: commit 79c8f1f , on aws2 machine cmd used: python3 gramtools.py --quasimap --fastaq /data1/gramtools_test_data/input/fastq/randomReads.10000.fastq.gz --gram-files /data1/gramtools_test_data/output/final/7G8_prg --ksize 17
no actual error message, but quasimapping very slow, processed 200 reads after leaving it running for 3 hours
gramtools version used: commit 79c8f1f , on aws2 machine cmd used: python3 gramtools.py --quasimap --fastaq /data1/gramtools_test_data/input/fastq/randomReads.10000.fastq.gz --gram-files /data1/gramtools_test_data/output/final/7G8_prg --ksize 17
no actual error message, but quasimapping very slow, processed 200 reads after leaving it running for 3 hours