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iqbal-lab-org / gramtools

Genome inference from a population reference graph
MIT License
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Build command optionally skips building PRG #95

Closed ffranr closed 6 years ago

ffranr commented 6 years ago

In some instances, gramtools should not be responsible for building the linear PRG. Instead, a pre-built linear PRG should be provided to the gramtools build command.

The build command will still need to run because gramtools needs an opportunity to build other supporting data structures (such as masks).

Example command: gramtools build --gram-directory ./gram --prg ./prg

iqbal-lab commented 6 years ago

this would be awesome, as I have an initial MHC PRG to try out.

ffranr commented 6 years ago

Merged into master here: d8a3082a921579e65081fa1932c42c4f2fb7953a

iqbal-lab commented 6 years ago

ooh