Add dockerfile - Githubissues

iqbal-lab-org / make_prg

Code to create a PRG from a Multiple Sequence Alignment file

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Add dockerfile #21

Closed mbhall88 closed 3 years ago

mbhall88 commented 3 years ago

Added

Dockerfile
-V option to get version

Changed

A test that was clustering all unique 5-mers was reduced to all 4-mers as the memory usage of all 5-mers was causing a segfault when trying to run the tests during the docker image build.

Removed

Singularity file as it is redundant with the new Dockerfile (that will be hosted on quay.io)
scipy dependency. We never actually explicitly use scipy.

Once this PR is approved I will set quay.io to build on tagged commits (i.e. version releases)

leoisl commented 3 years ago

All looks fine to me, I did not find any issues at all!