iqbal-lab-org / make_prg

Code to create a PRG from a Multiple Sequence Alignment file
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Bump pyinstaller from 5.13.0 to 5.13.1 #67

Closed dependabot[bot] closed 9 months ago

dependabot[bot] commented 9 months ago

Bumps pyinstaller from 5.13.0 to 5.13.1.

Release notes

Sourced from pyinstaller's releases.

v5.13.1

Please see the v5.13.1 section of the changelog for a list of the changes since v5.13.0. Note that this is a bugfix only release. It's primary purpose is to publish pyinstaller/pyinstaller#7827.

Changelog

Sourced from pyinstaller's changelog.

5.13.1 (2023-08-26)

Security


* (Windows) Ensure that the access to temporary directories created by the
  ``matplotlib`` and ``win32com`` run-time hooks is restricted to the user
  running the frozen application, even if the directory in the ``TMP`` or
  ``TEMP`` variables points to a system-wide *world writable* location that can
  be accessed by all users. (:issue:`7827`)

Bugfix


* (macOS) Fix :func:`pkgutil.iter_modules` failing to find submodules of a
  package that contains data files when running as a macOS .app bundle.
  (:issue:`7884`)
* (Windows) Fix ``win32com`` run-time hook to fully isolate the ``gen_py``
  cache. This prevents access to the global cache, which results in errors when
  the global cache contains some, but not all, required modules. (:issue:`6257`)
* (Windows) Fix splash screen not being able to locate collected Tk resources in
  onefile applications created in MSYS2 python environment. (:issue:`7828`)
* (Windows) Fixed bug where GdkPixbuf loaders.cache dll paths are absolute paths
  (e.g. ``C:/tools/msys64/mingw64/lib/gdk-pixbuf-2.0/2.10.0/loaders/*.dll``) and
  not relative paths (e.g.
  ``lib\\gdk-pixbuf\\loaders\\libpixbufloader-png.dll``) when the file is
  generated in the MSYS2/mingw64 environment. This results in the program
  crashing when run on another Windows machine because it cannot find the
  GdkPixbuf loader DLLs. (:issue:`7842`)
* Exclude NVIDIA graphics driver libraries from vendoring. (:issue:`7746`)
* Fix error handling in Glib schema compilation helper function. Ignore
  character encoding errors when reading stdout/stderr from
  ``glib-schema-compile`` process; this fixes errors in MSYS2/mingw64
  environment, caused by ``U+201C`` and ``U+201D`` quotation marks in the
  output. (:issue:`7833`)
* Implement a work-around for un-initialized ``sys._stdlib_dir`` and ensure that
  python-frozen stdlib modules in Python >= 3.11 have ``__file__`` attribute
  set. (:issue:`7847`)

Hooks
~~~~~

* Add support for commercial PyQt5 and PyQt6 wheels. (:issue:`7770`)

Bootloader
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<details>
<summary>Commits</summary>

<ul>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/bc49d00b6f246d793e01bfa7a99a66e3d3fcfa73"><code>bc49d00</code></a> Release v5.13.1. [skip ci]</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/550b9271c085a73cbced9a601a234d54cecb8d06"><code>550b927</code></a> bootloader: always call Py_GetPath before Py_SetPath</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/4f2e0302584d0aea0834f24ba8b1c6cd05143f3b"><code>4f2e030</code></a> Add Nvidia libraries to Unix exclusion list (<a href="https://redirect.github.com/pyinstaller/pyinstaller/issues/7746">#7746</a>)</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/330ab13bb5e207589a8c875c730a481b1e4f31a0"><code>330ab13</code></a> hookutils: qt: look for commercial pyqt to determine layout</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/4c2652cd744fc0c392e1882a212ed1105a3583cd"><code>4c2652c</code></a> Make _pyi_rth_utils Python 3.7 compatible.</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/2ecfedf1b3cf160856baa7872be4e96ef196f0bb"><code>2ecfedf</code></a> Fix readthedocs building theme selection. [skip ci]</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/dcb2b177cb71fb8bc5a9d958a84031831e40de62"><code>dcb2b17</code></a> Fix pkgutil.iter_modules for symbolically linked packages</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/65fd7c40d5393d17bee55233776af637fb7e6ab7"><code>65fd7c4</code></a> Fix msys2 dll paths in GdkPixbuf loaders.cache gen (<a href="https://redirect.github.com/pyinstaller/pyinstaller/issues/7842">#7842</a>)</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/1e8484b203b01f3ff5a4d18ac6e56c271b7da810"><code>1e8484b</code></a> hookutils: gi: fix error handling in compile_glib_schema_files</li>
<li><a href="https://github.com/pyinstaller/pyinstaller/commit/e7f63805e823036767b2d70ad320427270c2214b"><code>e7f6380</code></a> bootstrap: add a work-around for sys._stdlib_dir not being set</li>
<li>Additional commits viewable in <a href="https://github.com/pyinstaller/pyinstaller/compare/v5.13.0...v5.13.1">compare view</a></li>
</ul>
</details>

<br />
[![Dependabot compatibility score](https://dependabot-badges.githubapp.com/badges/compatibility_score?dependency-name=pyinstaller&package-manager=pip&previous-version=5.13.0&new-version=5.13.1)](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) ---
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codecov[bot] commented 9 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Comparison is base (dd5fd72) 99.73% compared to head (d7c6ac3) 99.73%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #67 +/- ## ======================================= Coverage 99.73% 99.73% ======================================= Files 18 18 Lines 1528 1528 ======================================= Hits 1524 1524 Misses 4 4 ```

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