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iqbal-lab-org / pandora

Pan-genome inference and genotyping with long noisy or short accurate reads
MIT License
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Refactor common default CLI argument values #336

Open leoisl opened 11 months ago

leoisl commented 11 months ago

See Zam's comment at https://github.com/rmcolq/pandora/pull/335

Basically, we have several common default CLI args for compare, map and discover, see

https://github.com/rmcolq/pandora/blob/master/include/compare_main.h

https://github.com/rmcolq/pandora/blob/master/include/map_main.h

https://github.com/rmcolq/pandora/blob/master/include/denovo_discovery/discover_main.h

Would be better if there was a header file defining these default values so that we don't duplicate them