iqbal-lab-org / pandora

Pan-genome inference and genotyping with long noisy or short accurate reads
MIT License
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Downgrade log level from warning to info for "[warning] Could not find reference sequence for <gene> in the PRG so using the consensus path" #349

Open leoisl opened 8 months ago

leoisl commented 8 months ago

Mabi got confused by this warning message, and I think the common use case for pandora is to actually not receive reference sequences for the genes and automatically infer it from the sample mappings. So I think this warning should be downgraded to info, as a warning seems to tell the user they did sth that might not be correct or unusual, which is not the case here.