feat: adds flag --no-gene-coverage-filtering to pandora map, compare and discover

iqbal-lab-org / pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

MIT License

107 stars 14 forks source link

feat: adds flag --no-gene-coverage-filtering to pandora map, compare and discover #352

Closed leoisl closed 7 months ago

leoisl commented 7 months ago

This PR adds the flag --no-gene-coverage-filtering to pandora map, compare and discover subcommands:

  --no-gene-coverage-filtering
                              Do not filter genes based on their coverage, effectively ignoring params --min-abs-gene-coverage, --min-rel-gene-coverage, --max-rel-gene-coverage and --min-gene-coverage-proportion. This is useful if you are not using read datasets.