Mixtures results are ambiguous without prior knowledge of subspecies

iqbal-lab / Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop

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Mixtures results are ambiguous without prior knowledge of subspecies #108

Closed Phelimb closed 5 years ago

Phelimb commented 8 years ago

There are cases where we report mixtures of species and report only 1 lineage.

We should be consistent and always report the same number of phylo_group, species and lineage in the same order so results can be interpreted and parsed easily.

Phelimb commented 5 years ago

https://github.com/Mykrobe-tools/mykrobe/issues/48