JSON output for TB always prints R when stdout prints r

iqbal-lab / Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop

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JSON output for TB always prints R when stdout prints r #6

Closed Phelimb closed 9 years ago

Phelimb commented 10 years ago

e.g.

/Mykrobe.predictor.tb --file /Net/wombat/dipro/mmm/gorm/v3/dat/Mtub/stampy/00005000/C00005327_R00000039.bam --install_dir /home/zam/dev/git/myKrobe-predictor --method InSilicoOligos --format JSON