iqbal-lab / Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop
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Document special case of Clinda output #88

Closed Phelimb closed 8 years ago

Phelimb commented 8 years ago

The options for Clindamycin output are:

R(constitutive) R(inducible)

r(constitutive) r(inducible)

S

The "constitutive" is implied for all the other drugs and just means that there's a direct relationship between the gene and resistance (the usual case).

However, Clindamycin has a special case. When any of the ERM* genes are present the isolate will become resistant to Clindamycin if first treated with Erythromycin (hence induced) but not otherwise \cite{}. We have the (constitutive), (inducible) in order to distinguish between these two cases.