search

iqbal-lab / cortex

reference free variant assembly
32 stars 13 forks source link

Cortex not outputting empty VCF when genotyped calls file is empty #25

Open iqbal-lab opened 4 years ago

iqbal-lab commented 4 years ago

This is because of this line https://github.com/iqbal-lab/cortex/blob/6d8e2f9f1984651c253bdd9d748acf6efa54c165/scripts/calling/run_calls.pl#L1511

one solution might be to simply print VCF header here