Bump up seq_file dependency - Githubissues

iqbal-lab / cortex

reference free variant assembly

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Bump up seq_file dependency #28

Open bricoletc opened 3 years ago

bricoletc commented 3 years ago

Currently we bundle a 2012-version of seq_file and also an old version of htslib (im not sure which version however).

If we bump up seq_file to latest version (I see a date of 2015 in seq_file.h on the repo), we could:

Bundle only the two header files in seq_file, like gramtools does
Remove the string_buffer dependency, as new seq_file does not require it (this is written here)
Bump up htslib

@iqbal-lab how useful would this be?