iqtree iqtree2 issues - Githubissues

iqtree / iqtree2

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

GNU General Public License v2.0

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issues

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How to reduce verbosity of build logs?

#278 corneliusroemer closed 3 months ago
1
Consider lowering minimum clang version to 16 for bioconda compatibility

#277 corneliusroemer closed 3 months ago
1
doc: code not well formatted for macosx compilation guide

#276 corneliusroemer opened 4 months ago
0
Build issues on macOS 14.5: ` error: call to 'gettimeofday' is ambiguous`

#275 corneliusroemer closed 2 months ago
1
Suggestion: Error instead of warn if `--pathogen-force` is set but cmaple not integrated

#274 corneliusroemer opened 4 months ago
0
Document in help string that `--nt`/`-c`/`-T`/`--threads` are synonyms, print always `-T` instead of `-nt`

#273 corneliusroemer opened 4 months ago
1
Bug in writing best_model.nex file

#272 roblanf closed 4 months ago
1
Crash due to assertion failure in `PhyloSuperTreePlen::computeFuncDerv`

#270 davidcerny opened 4 months ago
3
Fix issue #255

#269 flashhhhh closed 3 months ago
1
Support Exporting Analysis to MrBayes

#267 IntegerLimit opened 4 months ago
3
Support Exporting Codon Analysis to MrBayes Block Files

#266 IntegerLimit closed 4 months ago
0
Support Exporting Protein, Binary and Morphological Data to MrBayes

#264 IntegerLimit closed 4 months ago
0
not an issue, would like clarification on how to use pmsf

#262 vmkhot closed 4 months ago
0
Error when estimating linked exchangeabilities (GTRpmix)

#261 mjamy closed 4 months ago
4
Support Exporting DNA/RNA Analysis to MrBayes Block Files

#260 IntegerLimit closed 4 months ago
0
User warning when induced root not found in gCF

#259 ryneches closed 3 months ago
0
[BUG] Infinite loop while using BNNI under PMSF model

#255 StefanFlaumberg closed 3 months ago
2
problem with start the program in command

#252 zeynab1995 closed 4 months ago
12
Add option to force-unroot input trees

#251 roblanf opened 4 months ago
4
How to obtain the site frequency for each amino acid site under a homogeneous model

#246 ZQ1126 closed 4 months ago
1
[Feature Request] Add site-specific rate profile support

#244 StefanFlaumberg opened 4 months ago
3
Replace the zlib library with zstd or lz4

#243 bqminh opened 4 months ago
0
ModelFinder doesn't save checkpoint of FreeRate model to model.gz file

#241 bqminh closed 4 months ago
2
Description of -fast option

#239 ebraun68 closed 5 months ago
1
cannot access docs

#235 blemmond closed 5 months ago
1
IQ-TREE CRASHES WITH SIGNAL ABORTED: -czb threshold specification

#232 DFornasiero opened 5 months ago
4
IQTree::optimizeNNI(bool): Assertion `curScore > appliedNNIs.at(0).newloglh - 0.1' failed.

#230 OliveiraDS-hub opened 5 months ago
4
Onnxupdate gpu time

#229 Hashara closed 5 months ago
0
Sequence order in the input and parallelism affect reproducibility

#228 apcamargo closed 5 months ago
5
Redundant double-bracket ‘((…))’ with closing bracket ending at (line 1 column 6596)

#227 rubiafilogenetica closed 4 months ago
2
IQtree uses an overly stringent constraint tree parser

#226 corneliusroemer opened 5 months ago
3
Double-quoting numeric values in gCF & sCFL .cf.tree.nex output makes FigTree to sort them as strings

#225 lccra closed 5 months ago
2
IQ-TREE CRASHES WITH SIGNAL ABORTED

#221 wyhhexa opened 5 months ago
5
Any suggestions to handle different variations?

#219 lw78943 closed 5 months ago
0
Double 2.3.4 tags

#218 starsareintherose closed 5 months ago
5
add USE_OLD_NN CMakeLists.txt

#217 Hashara closed 5 months ago
0
Different tree format for scfl?

#216 simone-says closed 5 months ago
1
Fix bug reading input rate file

#211 tothuhien closed 5 months ago
2
SIGNAL SEGMENTATION FAULT error (v2.3.4)

#207 Lfulcrum closed 5 months ago
5
ModelSelection with IQTREE 2 v2.3.4 COVID-edition

#206 lsjermiin closed 5 months ago
1
Process stuck in INITIALIZING CANDIDATE TREE SET

#204 OliveiraDS-hub closed 5 months ago
3
cpu and wall time for merging and partition calculations

#203 Hashara closed 5 months ago
0
Error with the constrained tree search

#197 chainorato closed 5 months ago
3
Feature request: Generate MrBayes block from IQ-TREE

#195 eosthusiast opened 6 months ago
10
SIGNAL SEGMENTATION FAULT

#184 OliveiraDS-hub closed 6 months ago
2
Expand CI System to Build for Mac x86-64 and Windows x86-64

#183 IntegerLimit closed 6 months ago
4
Enhancement request: Implement +ASC option to speed up MixtureFinder searches on supermatrices lacking constant sites

#181 vinuesa opened 6 months ago
3
A possible bug?

#180 chainorato closed 6 months ago
8
Compliation error

#179 ajithperera closed 6 months ago
6
A question that how to gene tree root on my data？

#176 zhangwenda0518 closed 6 months ago
3

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