substitution models need an Enum

iqtree / piqtree2

a python library that exposes features from iqtree2 - efficient software for phylogenomic inference

GNU General Public License v2.0

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substitution models need an Enum #17

Open GavinHuttley opened 1 week ago

GavinHuttley commented 1 week ago

as discussed earlier -- makes it easier to check they're being correctly input

thomaskf commented 1 week ago

DNA models:

JC, F81, K80, HKY, TN, TNe, K81, K81u, TPM2, TPM2u, TPM3, TPM3u, TIM, TIMe, TIM2, TIM2e, TIM3, TIM3e, TVM, TVMe, SYM, GTR

thomaskf commented 1 week ago

AA models: Blosum62,cpREV,Dayhoff,DCMut,EAL,ELM,FLAVI,FLU,GTR20,HIVb,HIVw,JTT,JTTDCMut,LG,mtART,mtMAM,mtREV,mtZOA,mtMet,mtVer,mtInv,Poisson,PMB,Q.bird,Q.insect,Q.mammal,Q.pfam,Q.plant,Q.yeast,rtREV,VT,WAG