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iqtree / piqtree2

a python library that exposes features from iqtree2 - efficient software for phylogenomic inference
GNU General Public License v2.0
6 stars 1 forks source link

Leverage github actions to build a wheel for submission to pypi #2

Closed khiron closed 2 days ago

khiron commented 4 weeks ago

We want to have the ability to rebuild the library for all 3 OSes such that we can publish to pypi as part of a release being triggered.

Gavin said that this should be possible to build a wheel as part of our CI so that it contains the linux/mac/windows specific libiqtree libraries in OS specific builds

I'm not sure how to do this, and haven't had time to research that.

rmcar17 commented 3 weeks ago

So far, I've set up a build GitHub action to generate x86_64 manylinux (only this I've verified) and musllinux wheels, as well as macos (x86_64 and arm64) wheels.

rmcar17 commented 2 weeks ago

I've dropped support for musllinux (issues with cogent3 - numba dependency doesn't provide wheel) and arm linux (various issues - can't find eigen3 library on x86 and hanging on build step on ARM).

We do support manylinux2014_x86_64 (vast, vast majority of linux distributions), and both Intel and M1 macs. No support for windows (for now) as the libiqtree branch of IQTree does not support it yet.

rmcar17 commented 1 week ago

Wheel submission to test pypi has been verified