iqtree / piqtree2

a python library that exposes features from iqtree2 - efficient software for phylogenomic inference
GNU General Public License v2.0
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pre-alpha release feature target #6

Open GavinHuttley opened 2 weeks ago

GavinHuttley commented 2 weeks ago
GavinHuttley commented 2 weeks ago

example for piqtree2.build_tree()

aln  = ...
tree = piqtree2.build_tree(aln, model_name="GTR", rate_het="G", freq_code: enum="F", )
# F is from alignment, FO is optimised, FQ=all states equally frequent"
# default for rate_het is None
tree.get_figure()