Repertoire Similarity/Distance/Overlap in Tapis

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Repertoire Similarity/Distance/Overlap in Tapis #62

Open schristley opened 3 years ago

schristley commented 3 years ago

From D4.1:

[ ] Morisita Horn
[ ] Bray-Curtis
[ ] Jaccard
[ ] Venn diagrams
[ ] Cosine similarity
[ ] Levenstein or Hamming distance to build network
[ ] Bipartite graphs
[ ] Differential clone expression
[ ] CompAIRR

schristley commented 2 years ago

Hi @bcorrie , I'm looking for the CompAIRR Tapis app but cannot find it in the tapis repository. Is it on some branch or maybe in just your development environment?

bcorrie commented 2 years ago

@schristley currently it is pretty experimental and is very specific to the Gateway, so it currently only exists in the Gateway analysis dev branch here:

https://github.com/sfu-ireceptor/gateway/tree/analysis/resources/agave_apps/compairr-singularity