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irycisBioinfo / PATO

PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
GNU General Public License v3.0
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classifier #1

Open MariaPerezVazquez opened 3 years ago

MariaPerezVazquez commented 3 years ago

I am trying to make the example in wiki, one I have installed PATO I try to run classifier and I get the following error

species <- classifier(files,n_cores = 20,type = 'prot') Error in file_list[, 1] : incorrect number of dimensions

Any help would be great Maria

AnaPTedim commented 2 years ago

Hi,

Did you solve it? I have exactly the same problem.

Thanks!

valflanza commented 2 years ago

Hi Ana.

Yes. you have to transform the "files" to a data.frame.

''' files <- files %>% as.data.frame() species <- classifier(files,n_cores = 20,type = 'prot') '''

AnaPTedim commented 2 years ago

Thanks!!!!

El lun., 20 dic. 2021 14:54, Val F. Lanza @.***> escribió:

Hi Ana.

Yes. you have to transform the "files" to a data.frame.

''' files <- files %>% as.data.frame() species <- classifier(files,n_cores = 20,type = 'prot') '''

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