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isaacovercast
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easySFS
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
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Confirmation required in case of sample differences between vcf and popfile
#69
r-poloni
closed
2 months ago
4
Very low projection value
#68
ModiShrushti
closed
4 months ago
9
Trouble obtaining SFS files
#67
LeoVincenzi
closed
6 months ago
7
EasySFS runtime? Running forever?
#66
lokeyCEU
closed
6 months ago
8
killed process in easySFS
#65
SunJJ230120
closed
1 year ago
2
Inquiry over projections
#64
FernandoLeG
closed
1 year ago
1
killed process
#63
Priambodobagus
closed
1 year ago
2
--proj option
#62
cutykaka
closed
1 year ago
3
Monomorphic sites with easySFS from VCF file
#61
gsgarlata
closed
1 year ago
1
how to interpret folded sfs-vector?
#60
mennodejong1986
closed
1 year ago
2
pop0 and pop1 notation in fastsimcoal2 outputs
#59
bchak10
closed
1 year ago
2
(Very minor issue) Wrong paper attached
#58
forianfinest
closed
1 year ago
1
number of sites in datadict vs. folded sfs
#57
tida-one
closed
1 year ago
4
Trouble creating multidimesional SFSs
#56
Yelows83
opened
1 year ago
1
Generating pseudoreplicate SFS
#55
grcvhon
closed
1 year ago
9
Plotting SFS
#54
clorenzo1
opened
1 year ago
1
running easySFS on vcf produced by discoSNP
#53
clorenzo1
closed
1 year ago
3
Analysis appears to run but no output folder or files
#52
jamesyboy01
closed
1 year ago
12
extra observations in some populations
#51
carolinapinapaez
closed
2 years ago
3
In the output, what do the 0s and 1s after the frequencies represent?
#50
mehakmadhura
closed
2 years ago
1
No module named 'dadi'
#49
XiaXiaTianTian
closed
1 year ago
8
Monomorphic sites
#48
laura1hagemann2
closed
2 years ago
4
Monomorphic sites with VCF from stacks
#47
meganlsmith
closed
1 year ago
8
how to get sfs information for stairway plot 2
#46
ChenDepp
closed
2 years ago
7
example vcf not provided
#45
cbird808
closed
3 years ago
2
get a unfolded site frequency spectrum
#44
chenqing-1996
closed
3 years ago
4
run easySFS.py error
#43
chenqing-1996
closed
3 years ago
7
how to interpret results
#42
selasphoruskershaw
closed
3 years ago
2
Sum of frequencies on projected DAF
#41
OliverPStuart
closed
3 years ago
6
Zero DAF frequency bin grows in small projections
#40
OliverPStuart
closed
3 years ago
1
how can I choose the projection values
#39
zilaijuand
closed
3 years ago
3
Issue when there are a lot of missed data in VCF file
#38
noscode
closed
3 years ago
2
Mutation rate for iyprad output
#37
dylanHco
closed
3 years ago
2
ancestral stat add
#36
sunshichao0916
closed
3 years ago
1
--proj
#35
schnappi-wkl
closed
3 years ago
3
easySFS removes existing directories if the user is not careful with the -o flag
#34
wyoibc
closed
3 years ago
1
NameError: name 'raw_input' is not defined
#33
janxkoci
closed
3 years ago
1
projection changed to one snp per locus
#32
MaevaTecher
closed
4 years ago
2
Which individuals were used to calculate the SFS
#31
Jolvii85
closed
4 years ago
8
multiSFS building fails
#30
meganlsmith
closed
4 years ago
3
ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size.
#29
EveTC
closed
4 years ago
3
MemoryError: Unable to allocate 72.3 PiB for an array with shape
#28
isisarantes
closed
4 years ago
1
no output files created
#27
isisarantes
closed
4 years ago
3
VCF input error: "TypeError: startswith first arg must be bytes or a tuple of bytes, not str"
#26
beausoleilmo
closed
4 years ago
4
No module named tridiag
#25
PierreNois
closed
4 years ago
1
Fixed xrange issue
#24
PhDMattyB
closed
1 year ago
0
file names in fastsimcoal2 folder
#23
smallfishcui
closed
5 years ago
1
missing data and projection values
#22
angelesdecara
closed
5 years ago
17
why sfs contained decimals?
#21
liuyanhu
closed
5 years ago
2
About the --proj parameter in easySFS
#20
Yun-HongWu
closed
5 years ago
6
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