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isabelrem / 2023-Software-Development-Assessment

MIT License
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41 exon boundaries #44

Closed TomLivesey-UoM closed 9 months ago

TomLivesey-UoM commented 9 months ago

I have extracted exon boundary coordinates and numbers from the VV API output and added to the json and .bed files created by the generate_bed.py. The script will now ask the user whether they wish to have the coordinates in the bed file and json as the coordinates within the identified mane_select transcript or genomic coordinates using their chosen genome build. Which they choose will determine the layout of the bedfile produced (the transcript won't be listed if genomic coords are requested).

egle0711 commented 9 months ago

The updates for extracting exon boundaries and implementing user choice between transcript and genomic coordinates in generate_bed.py are well-executed, enhancing the script's functionality.