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isabelrem / 2023-Software-Development-Assessment

MIT License
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Create base file to request data from PanelApp API #5

Closed jess789550 closed 1 year ago

TomLivesey-UoM commented 1 year ago

I will create a base file to request data from the PanelApp API, to which methods for requesting specific data types- (i.e., gene list and/or gene coordinates for a bed file) can be added.

isabelrem commented 1 year ago

Determining endpoints for API:

/panels/{panel_pk}/genes/ = search panel app API using clinical indication column value from national directory as input

`GET /api/v1/panels/?type=gms-rare-disease-virtual` = get list of panels from gms approved panel app - use information within to search for panels via R code.

TomLivesey-UoM commented 1 year ago

Pushed to issue_5 branch

jess789550 commented 1 year ago

Needs to have user input of R code or genetic disease. PEP-8 formatting required.

jess789550 commented 1 year ago

Logging and Testing will need to be added at some point