isayevlab / Auto3D_pkg

Auto3D generates low-energy conformers from SMILES/SDF
MIT License
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No RMSD calculations for k=1 #85

Open OphirKa opened 3 weeks ago

OphirKa commented 3 weeks ago

In the ranking part ("Begin to select structures that satisfy the requirements...") in case only one conformed is needed (k=1), avoid looking for unique structures using RMSD calculations, and return only the conformer with the lowest energy. The changes were performed in the file src/ranking.py in the function top_k().